2.4.3 Export given positions into a table format.

The OutputAsTable filter writes the nucleotide content of given positions in a table format.

Synopsis:

maf.filter=                                 \
    [...],
    OutputTable(                            \
        file=data.txt,                      \
        species=Species1,Species2,Species3, \
        reference=RefSpecies,               \
        compression=none),                  \
    [...]

Arguments:

file={none|{path}}

A file path where to write date in table format.

compression={none|gzip|zip|bzip2}

Compression format for output file.

species={list of {string}}

Select species for which data should be output (one column per species).

reference={string}

Which species should be used for outputting coordinates.