2.1.4 Concatenating: merge consecutive blocks up to a certain size

The Concatenate filter fuses consecutive blocks until the concatenated block reaches a minimal size.

Synopsis:

maf.filter=                                 \
    [...],
    Concatenate(minimum_size=10000, ref_species=Hsapiens), \
    [...]

Arguments:

minimum_size={int}

The minimum size for the blocks to be reached.

ref_species={string}

If given, only blocks with identical chromosome tags in the reference species will be merged.